No. |
Link to 3pfdb+ |
Pfam Description |
1 |
PF00106
|
short chain dehydrogenase |
2 |
PF04786
|
ssDNA binding protein |
3 |
PF03482
|
sic protein |
4 |
PF00747
|
ssDNA binding protein |
5 |
PF04521
|
ssRNA positive strand viral 18kD cysteine rich protein |
6 |
PF10777
|
sigma70 family sigma factor YlaC |
7 |
PF12251
|
snRNA-activating protein of 50kDa MW C terminal |
8 |
PF03491
|
Serotonin (5-HT) neurotransmitter transporter, N-terminus |
9 |
PF02117
|
Serpentine type 7TM GPCR chemoreceptor Sra |
10 |
PF10292
|
Serpentine type 7TM GPCR receptor class ab chemoreceptor |
11 |
PF02175
|
Serpentine type 7TM GPCR chemoreceptor Srb |
12 |
PF10316
|
Serpentine type 7TM GPCR chemoreceptor Srbc |
13 |
PF10317
|
Serpentine type 7TM GPCR chemoreceptor Srd |
14 |
PF10318
|
Serpentine type 7TM GPCR chemoreceptor Srh |
15 |
PF10327
|
Serpentine type 7TM GPCR chemoreceptor Sri |
16 |
PF10319
|
Serpentine type 7TM GPCR chemoreceptor Srj |
17 |
PF10320
|
Serpentine type 7TM GPCR chemoreceptor Srsx |
18 |
PF10321
|
Serpentine type 7TM GPCR chemoreceptor Srt |
19 |
PF10322
|
Serpentine type 7TM GPCR chemoreceptor Sru |
20 |
PF10323
|
Serpentine type 7TM GPCR chemoreceptor Srv |
21 |
PF10324
|
Serpentine type 7TM GPCR chemoreceptor Srw |
22 |
PF10328
|
Serpentine type 7TM GPCR chemoreceptor Srx |
23 |
PF10325
|
Serpentine type 7TM GPCR chemoreceptor Srz |
24 |
PF10326
|
Serpentine type 7TM GPCR chemoreceptor Str |
25 |
PF04439
|
Streptomycin adenylyltransferase |
26 |
PF05221
|
S-adenosyl-L-homocysteine hydrolase |
27 |
PF00670
|
S-adenosyl-L-homocysteine hydrolase, NAD binding domain |
28 |
PF08132
|
S-adenosyl-l-methionine decarboxylase leader peptide |
29 |
PF02675
|
S-adenosylmethionine decarboxylase |
30 |
PF01941
|
S-adenosylmethionine synthetase (AdoMet synthetase) |
31 |
PF05931
|
Staphylococcal AgrD protein |
32 |
PF03752
|
Short repeats of unknown function |
33 |
PF10369
|
Small subunit of acetolactate synthase |
34 |
PF06369
|
Sea anemone cytotoxic protein |
35 |
PF10796
|
Sigma-S stabilisation anti-adaptor protein |
36 |
PF08025
|
Spider antimicrobial peptide |
37 |
PF08102
|
Scorpion antimicrobial peptide |
38 |
PF04996
|
Succinylarginine dihydrolase |
39 |
PF04952
|
Succinylglutamate desuccinylase / Aspartoacylase family |
40 |
PF14397
|
Sugar-transfer associated ATP-grasp |
41 |
PF09759
|
Spinocerebellar ataxia type 10 protein domain |
42 |
PF06677
|
Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) |
43 |
PF04700
|
Structural glycoprotein p40/gp41 conserved region |
44 |
PF01103
|
Surface antigen |
45 |
PF01145
|
SPFH domain / Band 7 family |
46 |
PF13421
|
SPFH domain-Band 7 family |
47 |
PF04940
|
Sensors of blue-light using FAD |
48 |
PF07441
|
SigmaK-factor processing regulatory protein BofA |
49 |
PF12820
|
Serine-rich domain associated with BRCT |
50 |
PF00686
|
Starch binding domain |
51 |
PF12876
|
Sugar-binding cellulase-like |
52 |
PF11526
|
Subunit of cleavage factor IA Pcf11 |
53 |
PF13541
|
Subunit ChlI of Mg-chelatase |
54 |
PF08764
|
Staphylococcus aureus coagulase |
55 |
PF07552
|
Spore Coat Protein X and V domain |
56 |
PF02248
|
Small coat protein |
57 |
PF11546
|
Staphylococcal complement inhibitor SCIN |
58 |
PF11007
|
Spore coat associated protein JA (CotJA) |
59 |
PF12815
|
Spt5 C-terminal nonapeptide repeat binding Spt4 |
60 |
PF11500
|
Spindle-body formation-associated protein |
61 |
PF10414
|
Sirohaem synthase dimerisation region |
62 |
PF07876
|
Stress responsive A/B Barrel Domain |
63 |
PF08287
|
Spc19 |
64 |
PF05652
|
Scavenger mRNA decapping enzyme (DcpS) N-terminal |
65 |
PF11969
|
Scavenger mRNA decapping enzyme C-term binding |
66 |
PF05384
|
Sensor protein DegS |
67 |
PF10069
|
Sensory domain found in DIguanylate Cyclases & Two-component systems |
68 |
PF05462
|
Slime mold cyclic AMP receptor |
69 |
PF04977
|
Septum formation initiator |
70 |
PF14144
|
Seed dormancy control |
71 |
PF12316
|
Segment polarity protein dishevelled (Dsh) C terminal |
72 |
PF07039
|
SGF29 tudor-like domain |
73 |
PF10031
|
Small integral membrane protein (DUF2273) |
74 |
PF03729
|
Short repeat of unknown function (DUF308) |
75 |
PF03777
|
Small secreted domain (DUF320) |
76 |
PF12406
|
Surface protein |
77 |
PF12419
|
SNF2 Helicase protein |
78 |
PF12548
|
Sulfatase protein |
79 |
PF13593
|
SBF-like CPA transporter family (DUF4137) |
80 |
PF05689
|
Salmonella repeat of unknown function (DUF823) |
81 |
PF05688
|
Salmonella repeat of unknown function (DUF824) |
82 |
PF05895
|
Siphovirus protein of unknown function (DUF859) |
83 |
PF06106
|
Staphylococcus protein of unknown function (DUF950) |
84 |
PF06124
|
Staphylococcal protein of unknown function (DUF960) |
85 |
PF06131
|
Schizosaccharomyces pombe repeat of unknown function (DUF963) |
86 |
PF07663
|
Sorbitol phosphotransferase enzyme II C-terminus |
87 |
PF03612
|
Sorbitol phosphotransferase enzyme II N-terminus |
88 |
PF06160
|
Septation ring formation regulator, EzrA |
89 |
PF08021
|
Siderophore-interacting FAD-binding domain |
90 |
PF03959
|
Serine hydrolase (FSH1) |
91 |
PF03276
|
Spumavirus gag protein |
92 |
PF10646
|
Sporulation and spore germination |
93 |
PF10676
|
Spore germination protein gerPA/gerPF |
94 |
PF10737
|
Spore germination protein GerPC |
95 |
PF08518
|
Spa2 homology domain (SHD) of GIT |
96 |
PF03616
|
Sodium/glutamate symporter |
97 |
PF08323
|
Starch synthase catalytic domain |
98 |
PF10342
|
Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family |
99 |
PF02895
|
Signal transducing histidine kinase, homodimeric domain |
100 |
PF11408
|
Sgs1 RecQ helicase |
101 |
PF00103
|
Somatotropin hormone family |
102 |
PF13694
|
Sec63/Sec62 complex-interacting family |
103 |
PF02650
|
Sporulation Regulator WhiA C terminal domain |
104 |
PF12282
|
Signal transduction histidine kinase |
105 |
PF00048
|
Small cytokines (intecrine/chemokine), interleukin-8 like |
106 |
PF14373
|
Superinfection immunity protein |
107 |
PF12559
|
Serine endopeptidase inhibitors |
108 |
PF10466
|
Saccharopepsin inhibitor I34 |
109 |
PF13734
|
Spi protease inhibitor |
110 |
PF09599
|
Salmonella-Shigella invasin protein C (IpaC_SipC) |
111 |
PF02060
|
Slow voltage-gated potassium channel |
112 |
PF10685
|
Stress-induced bacterial acidophilic repeat motif |
113 |
PF13543
|
SAM like domain present in kinase suppressor RAS 1 |
114 |
PF00477
|
Small hydrophilic plant seed protein |
115 |
PF03583
|
Secretory lipase |
116 |
PF08557
|
Sphingolipid Delta4-desaturase (DES) |
117 |
PF12103
|
Surface lipoprotein of Spirochaetales order |
118 |
PF03640
|
Secreted repeat of unknown function |
119 |
PF12701
|
Scd6-like Sm domain |
120 |
PF02664
|
S-Ribosylhomocysteinase (LuxS) |
121 |
PF10564
|
Sialic-acid binding micronemal adhesive repeat |
122 |
PF10156
|
Subunit 17 of Mediator complex |
123 |
PF11221
|
Subunit 21 of Mediator complex |
124 |
PF06179
|
Surfeit locus protein 5 subunit 22 of Mediator complex |
125 |
PF05669
|
SOH1 |
126 |
PF12692
|
S-adenosyl-L-methionine methyltransferase |
127 |
PF04672
|
S-adenosyl methyltransferase |
128 |
PF05430
|
S-adenosyl-L-methionine-dependent methyltransferase |
129 |
PF03492
|
SAM dependent carboxyl methyltransferase |
130 |
PF10672
|
S-adenosylmethionine-dependent methyltransferase |
131 |
PF09936
|
SAM-dependent RNA methyltransferase |
132 |
PF12929
|
Stretch-activated Ca2+-permeable channel component |
133 |
PF03775
|
Septum formation inhibitor MinC, C-terminal domain |
134 |
PF05209
|
Septum formation inhibitor MinC, N-terminal domain |
135 |
PF03776
|
Septum formation topological specificity factor MinE |
136 |
PF03083
|
Sugar efflux transporter for intercellular exchange |
137 |
PF13447
|
Seven times multi-haem cytochrome CxxCH |
138 |
PF00893
|
Small Multidrug Resistance protein |
139 |
PF11978
|
Shoulder domain |
140 |
PF01235
|
Sodium:alanine symporter family |
141 |
PF01699
|
Sodium/calcium exchanger protein |
142 |
PF00999
|
Sodium/hydrogen exchanger family |
143 |
PF00287
|
Sodium / potassium ATPase beta chain |
144 |
PF00939
|
Sodium:sulfate symporter transmembrane region |
145 |
PF06512
|
Sodium ion transport-associated |
146 |
PF08628
|
Sorting nexin C terminal |
147 |
PF08712
|
Scaffold protein Nfu/NifU N terminal |
148 |
PF12830
|
Sister chromatid cohesion C-terminus |
149 |
PF13945
|
Splicing factor, salt tolerance regulator |
150 |
PF13562
|
Sugar nucleotidyl transferase |
151 |
PF04069
|
Substrate binding domain of ABC-type glycine betaine transport system |
152 |
PF04258
|
Signal peptide peptidase |
153 |
PF01252
|
Signal peptidase (SPase) II |
154 |
PF05416
|
Southampton virus-type processing peptidase |
155 |
PF05543
|
Staphopain peptidase C47 |
156 |
PF02031
|
Streptomyces extracellular neutral proteinase (M7) family |
157 |
PF00450
|
Serine carboxypeptidase |
158 |
PF10502
|
Signal peptidase, peptidase S26 |
159 |
PF05577
|
Serine carboxypeptidase S28 |
160 |
PF05580
|
SpoIVB peptidase S55 |
161 |
PF13611
|
Serine peptidase of plant viral polyprotein, P1 |
162 |
PF00082
|
Subtilase family |
163 |
PF03419
|
Sporulation factor SpoIIGA |
164 |
PF09251
|
Salmonella phage P22 tail-spike |
165 |
PF02304
|
Scaffold protein B |
166 |
PF07410
|
Streptococcus thermophilus bacteriophage Gp111 protein |
167 |
PF11477
|
Sialyltransferase PMO188 |
168 |
PF10114
|
Sensory domain found in PocR |
169 |
PF01518
|
Sigma NS protein |
170 |
PF08188
|
Spermatozal protamine family |
171 |
PF00841
|
Sperm histone P2 |
172 |
PF06991
|
Splicing factor, Prp19-binding domain |
173 |
PF13765
|
SPRY-associated domain |
174 |
PF06958
|
S-type Pyocin |
175 |
PF09566
|
SacI restriction endonuclease |
176 |
PF09569
|
ScaI restriction endonuclease |
177 |
PF09570
|
SinI restriction endonuclease |
178 |
PF05635
|
S23 ribosomal protein |
179 |
PF03297
|
S25 ribosomal protein |
180 |
PF02482
|
Sigma 54 modulation protein / S30EA ribosomal protein |
181 |
PF11757
|
Suppressor of RNA silencing P21-like |
182 |
PF02773
|
S-adenosylmethionine synthetase, C-terminal domain |
183 |
PF02772
|
S-adenosylmethionine synthetase, central domain |
184 |
PF00438
|
S-adenosylmethionine synthetase, N-terminal domain |
185 |
PF05756
|
S-antigen protein |
186 |
PF00575
|
S1 RNA binding domain |
187 |
PF14444
|
S1-like |
188 |
PF02265
|
S1/P1 Nuclease |
189 |
PF13509
|
S1 domain |
190 |
PF01479
|
S4 domain |
191 |
PF07422
|
Sexual stage antigen s48/45 domain |
192 |
PF13275
|
S4 domain |
193 |
PF05116
|
Sucrose-6F-phosphate phosphohydrolase |
194 |
PF08472
|
Sucrose-6-phosphate phosphohydrolase C-terminal |
195 |
PF00277
|
Serum amyloid A protein |
196 |
PF04382
|
SAB domain |
197 |
PF03399
|
SAC3/GANP/Nin1/mts3/eIF-3 p25 family |
198 |
PF03435
|
Saccharopine dehydrogenase |
199 |
PF07738
|
Sad1 / UNC-like C-terminal |
200 |
PF08666
|
SAF domain |
201 |
PF09460
|
Saf-pilin pilus formation protein |
202 |
PF13144
|
SAF-like |
203 |
PF04092
|
SRS domain |
204 |
PF01259
|
SAICAR synthetase |
205 |
PF12115
|
Salivary protein of 15kDa inhibits CD4+ T cell activation |
206 |
PF05924
|
SAMP Motif |
207 |
PF00536
|
SAM domain (Sterile alpha motif) |
208 |
PF07647
|
SAM domain (Sterile alpha motif) |
209 |
PF01887
|
S-adenosyl-l-methionine hydroxide adenosyltransferase |
210 |
PF02198
|
Sterile alpha motif (SAM)/Pointed domain |
211 |
PF01342
|
SAND domain |
212 |
PF09133
|
SANTA (SANT Associated) |
213 |
PF02037
|
SAP domain |
214 |
PF06487
|
Sin3 associated polypeptide p18 (SAP18) |
215 |
PF13867
|
Sin3 binding region of histone deacetylase complex subunit SAP30 |
216 |
PF02199
|
Saposin A-type domain |
217 |
PF05184
|
Saposin-like type B, region 1 |
218 |
PF03489
|
Saposin-like type B, region 2 |
219 |
PF07277
|
SapC |
220 |
PF04499
|
SIT4 phosphatase-associated protein |
221 |
PF03058
|
Sar8.2 family |
222 |
PF11409
|
Smad anchor for receptor activation (SARA) |
223 |
PF04790
|
Sarcoglycan complex subunit protein |
224 |
PF05510
|
Sarcoglycan alpha/epsilon |
225 |
PF05366
|
Sarcolipin |
226 |
PF12383
|
Severe acute respiratory syndrome coronavirus 3b protein |
227 |
PF09399
|
SARS lipid binding protein |
228 |
PF08779
|
SARS coronavirus X4 like |
229 |
PF03343
|
SART-1 family |
230 |
PF04000
|
Sas10/Utp3/C1D family |
231 |
PF09368
|
Sas10 C-terminal domain |
232 |
PF00269
|
Small, acid-soluble spore proteins, alpha/beta type |
233 |
PF04259
|
Small, acid-soluble spore protein, gamma-type |
234 |
PF06426
|
Serine acetyltransferase, N-terminal |
235 |
PF11561
|
Single strand annealing-weakened 1 |
236 |
PF01172
|
Shwachman-Bodian-Diamond syndrome (SBDS) protein |
237 |
PF09377
|
SBDS protein C-terminal domain |
238 |
PF01758
|
Sodium Bile acid symporter family |
239 |
PF05992
|
SbmA/BacA-like family |
240 |
PF03110
|
SBP domain |
241 |
PF08313
|
SCA7, zinc-binding domain |
242 |
PF04144
|
SCAMP family |
243 |
PF02023
|
SCAN domain |
244 |
PF02404
|
Stem cell factor |
245 |
PF02667
|
Short chain fatty acid transporter |
246 |
PF04486
|
SchA/CurD like domain |
247 |
PF10148
|
Schwannomin-interacting protein 1 |
248 |
PF05463
|
Sclerostin (SOST) |
249 |
PF02630
|
SCO1/SenC |
250 |
PF05483
|
Synaptonemal complex protein 1 (SCP-1) |
251 |
PF14428
|
SCP1.201-like deaminase |
252 |
PF02036
|
SCP-2 sterol transfer family |
253 |
PF13530
|
Sterol carrier protein domain |
254 |
PF02616
|
ScpA/B protein |
255 |
PF05229
|
Spore Coat Protein U domain |
256 |
PF03803
|
Scramblase |
257 |
PF02982
|
Scytalone dehydratase |
258 |
PF08970
|
Sporulation inhibitor A |
259 |
PF05285
|
SDA1 |
260 |
PF00375
|
Sodium:dicarboxylate symporter family |
261 |
PF03313
|
Serine dehydratase alpha chain |
262 |
PF03315
|
Serine dehydratase beta chain |
263 |
PF01127
|
Succinate dehydrogenase/Fumarate reductase transmembrane subunit |
264 |
PF01972
|
Serine dehydrogenase proteinase |
265 |
PF06977
|
SdiA-regulated |
266 |
PF13630
|
SdpI/YhfL protein family |
267 |
PF12278
|
Sex determination protein N terminal |
268 |
PF08598
|
Sds3-like |
269 |
PF08491
|
Squalene epoxidase |
270 |
PF12390
|
Selenocysteine synthase N terminal |
271 |
PF01390
|
SEA domain |
272 |
PF07322
|
Seadornavirus Vp10 |
273 |
PF07407
|
Seadornavirus VP6 protein |
274 |
PF07387
|
Seadornavirus VP7 |
275 |
PF02810
|
SEC-C motif |
276 |
PF00995
|
Sec1 family |
277 |
PF12931
|
Sec23-binding domain of Sec16 |
278 |
PF03908
|
Sec20 |
279 |
PF08033
|
Sec23/Sec24 beta-sandwich domain |
280 |
PF04815
|
Sec23/Sec24 helical domain |
281 |
PF04811
|
Sec23/Sec24 trunk domain |
282 |
PF04136
|
Sec34-like family |
283 |
PF08314
|
Secretory pathway protein Sec39 |
284 |
PF03911
|
Sec61beta family |
285 |
PF02889
|
Sec63 Brl domain |
286 |
PF01369
|
Sec7 domain |
287 |
PF04048
|
Sec8 exocyst complex component specific domain |
288 |
PF07517
|
SecA DEAD-like domain |
289 |
PF01043
|
SecA preprotein cross-linking domain |
290 |
PF07516
|
SecA Wing and Scaffold domain |
291 |
PF13721
|
SecD export protein N-terminal TM region |
292 |
PF00584
|
SecE/Sec61-gamma subunits of protein translocation complex |
293 |
PF05364
|
Salmonella type III secretion SopE effector N-terminus |
294 |
PF06558
|
Secretion monitor precursor protein (SecM) |
295 |
PF07655
|
Secretin N-terminal domain |
296 |
PF04856
|
Securin sister-chromatid separation inhibitor |
297 |
PF00344
|
SecY translocase |
298 |
PF07549
|
SecD/SecF GG Motif |
299 |
PF04628
|
Sedlin, N-terminal conserved region |
300 |
PF06443
|
SEF14-like adhesin |
301 |
PF08357
|
SEFIR domain |
302 |
PF08238
|
Sel1 repeat |
303 |
PF11524
|
Selenium binding protein |
304 |
PF06936
|
Selenoprotein S (SelS) |
305 |
PF04593
|
Selenoprotein P, C terminal region |
306 |
PF04592
|
Selenoprotein P, N terminal region |
307 |
PF01641
|
SelR domain |
308 |
PF01403
|
Sema domain |
309 |
PF05474
|
Semenogelin |
310 |
PF01118
|
Semialdehyde dehydrogenase, NAD binding domain |
311 |
PF02774
|
Semialdehyde dehydrogenase, dimerisation domain |
312 |
PF09631
|
Sen15 protein |
313 |
PF12726
|
SEN1 N terminal |
314 |
PF06911
|
Senescence-associated protein |
315 |
PF04520
|
Senescence regulator |
316 |
PF13755
|
Sensor N-terminal transmembrane domain |
317 |
PF08059
|
SEP domain |
318 |
PF08806
|
Sep15/SelM redox domain |
319 |
PF06622
|
SepQ protein |
320 |
PF00735
|
Septin |
321 |
PF13845
|
Septum formation |
322 |
PF06066
|
SepZ |
323 |
PF03925
|
SeqA protein |
324 |
PF05482
|
Serendipity locus alpha protein (SRY-A) |
325 |
PF04360
|
Serglycin |
326 |
PF03348
|
Serine incorporator (Serinc) |
327 |
PF08824
|
Serine rich protein interaction domain |
328 |
PF00079
|
Serpin (serine protease inhibitor) |
329 |
PF05540
|
Serpulina hyodysenteriae variable surface protein |
330 |
PF06031
|
SERTA motif |
331 |
PF00273
|
Serum albumin family |
332 |
PF02403
|
Seryl-tRNA synthetase N-terminal domain |
333 |
PF06821
|
Serine hydrolase |
334 |
PF00856
|
SET domain |
335 |
PF08138
|
Sex peptide (SP) family |
336 |
PF06705
|
SF-assemblin/beta giardin |
337 |
PF12108
|
Splicing factor SF3a60 binding domain |
338 |
PF08920
|
Splicing factor 3B subunit 1 |
339 |
PF07189
|
Splicing factor 3B subunit 10 (SF3b10) |
340 |
PF08457
|
Sfi1 spindle body protein |
341 |
PF10638
|
Spindle body associated protein C-terminus |
342 |
PF03749
|
Sugar fermentation stimulation protein |
343 |
PF08209
|
Sgf11 (transcriptional regulation protein) |
344 |
PF08450
|
SMP-30/Gluconolaconase/LRE-like region |
345 |
PF12793
|
Sugar transport-related sRNA regulator N-term |
346 |
PF05002
|
SGS domain |
347 |
PF07093
|
SGT1 protein |
348 |
PF00017
|
SH2 domain |
349 |
PF04908
|
SH3-binding, glutamic acid-rich protein |
350 |
PF05276
|
SH3 domain-binding protein 5 (SH3BP5) |
351 |
PF00018
|
SH3 domain |
352 |
PF12913
|
SH3 domain of the SH3b1 type |
353 |
PF12914
|
SH3 domain of SH3b2 type |
354 |
PF13457
|
SH3-like domain |
355 |
PF11601
|
Shal-type voltage-gated potassium channels |
356 |
PF03983
|
SLA1 homology domain 1, SHD1 |
357 |
PF05546
|
She9 / Mdm33 family |
358 |
PF06128
|
Shigella flexneri OspC protein |
359 |
PF01488
|
Shikimate / quinate 5-dehydrogenase |
360 |
PF08501
|
Shikimate dehydrogenase substrate binding domain |
361 |
PF07004
|
Sperm-tail PG-rich repeat |
362 |
PF01549
|
ShK domain-like |
363 |
PF00464
|
Serine hydroxymethyltransferase |
364 |
PF10516
|
SHNi-TPR |
365 |
PF09851
|
Short C-terminal domain |
366 |
PF03579
|
Small hydrophobic protein |
367 |
PF04925
|
SHQ1 protein |
368 |
PF02491
|
SHS2 domain inserted in FTSA |
369 |
PF03876
|
SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 |
370 |
PF07557
|
Shugoshin C terminus |
371 |
PF07558
|
Shugoshin N-terminal coiled-coil region |
372 |
PF09032
|
Siah interacting protein, N terminal |
373 |
PF02973
|
Sialidase, N-terminal domain |
374 |
PF12135
|
Sialidase enzyme penultimate C terminal domain |
375 |
PF12887
|
SICA extracellular alpha domain |
376 |
PF12878
|
SICA extracellular beta domain |
377 |
PF12879
|
SICA C-terminal inner membrane domain |
378 |
PF09119
|
SicP binding |
379 |
PF11778
|
Septation initiation |
380 |
PF14163
|
Superinfection exclusion protein B |
381 |
PF06767
|
Sif protein |
382 |
PF00158
|
Sigma-54 interaction domain |
383 |
PF00309
|
Sigma-54 factor, Activator interacting domain (AID) |
384 |
PF04963
|
Sigma-54 factor, core binding domain |
385 |
PF04552
|
Sigma-54, DNA binding domain |
386 |
PF04546
|
Sigma-70, non-essential region |
387 |
PF03979
|
Sigma-70 factor, region 1.1 |
388 |
PF00140
|
Sigma-70 factor, region 1.2 |
389 |
PF04542
|
Sigma-70 region 2 |
390 |
PF04539
|
Sigma-70 region 3 |
391 |
PF04545
|
Sigma-70, region 4 |
392 |
PF08281
|
Sigma-70, region 4 |
393 |
PF02454
|
Sigma 1s protein |
394 |
PF13791
|
Sigma factor regulator C-terminal |
395 |
PF13800
|
Sigma factor regulator N-terminal |
396 |
PF03842
|
Silicon transporter |
397 |
PF06621
|
Single-minded protein C-terminus |
398 |
PF05422
|
Stress-activated map kinase interacting protein 1 (SIN1) |
399 |
PF08295
|
Sin3 family co-repressor |
400 |
PF03145
|
Seven in absentia protein family |
401 |
PF04801
|
Sin-like protein conserved region |
402 |
PF04954
|
Siderophore-interacting protein |
403 |
PF04938
|
Survival motor neuron (SMN) interacting protein 1 (SIP1) |
404 |
PF09052
|
Salmonella invasion protein A |
405 |
PF05565
|
Siphovirus Gp157 |
406 |
PF02146
|
Sir2 family |
407 |
PF13289
|
SIR2-like domain |
408 |
PF01206
|
SirA-like protein |
409 |
PF01380
|
SIS domain |
410 |
PF13580
|
SIS domain |
411 |
PF01202
|
Shikimate kinase |
412 |
PF02731
|
SKIP/SNW domain |
413 |
PF02437
|
SKI/SNO/DAC family |
414 |
PF09076
|
Streptomyces killer toxin-like |
415 |
PF01466
|
Skp1 family, dimerisation domain |
416 |
PF03931
|
Skp1 family, tetramerisation domain |
417 |
PF06214
|
Signaling lymphocytic activation molecule (SLAM) protein |
418 |
PF05889
|
Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) |
419 |
PF10531
|
SLBB domain |
420 |
PF07620
|
SLEI |
421 |
PF00395
|
S-layer homology domain |
422 |
PF09111
|
SLIDE |
423 |
PF07333
|
S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) |
424 |
PF02258
|
Shiga-like toxin beta subunit |
425 |
PF09494
|
Slx4 endonuclease |
426 |
PF04102
|
SlyX |
427 |
PF14438
|
SM domain found in Ataxin-2 |
428 |
PF09057
|
Second Mitochondria-derived Activator of Caspases |
429 |
PF06470
|
SMC proteins Flexible Hinge Domain |
430 |
PF03467
|
Smg-4/UPF3 family |
431 |
PF09346
|
SMI1 / KNR4 family (SUKH-1) |
432 |
PF06003
|
Survival motor neuron protein (SMN) |
433 |
PF12510
|
Smoothelin cytoskeleton protein |
434 |
PF04927
|
Seed maturation protein |
435 |
PF04355
|
SmpA / OmlA family |
436 |
PF01668
|
SmpB protein |
437 |
PF01713
|
Smr domain |
438 |
PF00835
|
SNAP-25 family |
439 |
PF11035
|
Small nuclear RNA activating complex subunit 2-like |
440 |
PF09808
|
Small nuclear RNA activating complex (SNAPc), subunit SNAP43 |
441 |
PF05739
|
SNARE domain |
442 |
PF09335
|
SNARE associated Golgi protein |
443 |
PF00565
|
Staphylococcal nuclease homologue |
444 |
PF00209
|
Sodium:neurotransmitter symporter family |
445 |
PF00176
|
SNF2 family N-terminal domain |
446 |
PF04855
|
SNF5 / SMARCB1 / INI1 |
447 |
PF03357
|
Snf7 |
448 |
PF09051
|
Stannin cytoplasmic |
449 |
PF09050
|
Stannin unstructured linker |
450 |
PF09049
|
Stannin transmembrane |
451 |
PF01174
|
SNO glutamine amidotransferase family |
452 |
PF07366
|
SnoaL-like polyketide cyclase |
453 |
PF12680
|
SnoaL-like domain |
454 |
PF13474
|
SnoaL-like domain |
455 |
PF13577
|
SnoaL-like domain |
456 |
PF07192
|
SNURF/RPN4 protein |
457 |
PF11538
|
Snurportin1 |
458 |
PF12610
|
Suppressor of cytokine signalling |
459 |
PF07525
|
SOCS box |
460 |
PF04158
|
Sof1-like domain |
461 |
PF01033
|
Somatomedin B domain |
462 |
PF03002
|
Somatostatin/Cortistatin family |
463 |
PF13981
|
SopA-like central domain |
464 |
PF13979
|
SopA-like catalytic domain |
465 |
PF11047
|
Salmonella outer protein D |
466 |
PF07487
|
SopE GEF domain |
467 |
PF07682
|
Sulphur oxygenase reductase |
468 |
PF02208
|
Sorbin homologous domain |
469 |
PF09666
|
Sororin protein |
470 |
PF04203
|
Sortase family |
471 |
PF03700
|
Sorting nexin, N-terminal domain |
472 |
PF01680
|
SOR/SNZ family |
473 |
PF04832
|
SOUL heme-binding protein |
474 |
PF04267
|
Sarcosine oxidase, delta subunit family |
475 |
PF06525
|
Sulfocyanin (SoxE) |
476 |
PF04268
|
Sarcosine oxidase, gamma subunit family |
477 |
PF12336
|
SOX transcription factor |
478 |
PF13501
|
Sulfur oxidation protein SoxY |
479 |
PF08770
|
Sulphur oxidation protein SoxZ |
480 |
PF12067
|
Sox C-terminal transactivation domain |
481 |
PF12444
|
Sox developmental protein N terminal |
482 |
PF03172
|
Sp100 domain |
483 |
PF03014
|
Structural protein 2 |
484 |
PF08616
|
Stabilisation of polarity axis |
485 |
PF14028
|
SpaB C-terminal domain |
486 |
PF02090
|
Salmonella surface presentation of antigen gene type M protein |
487 |
PF02510
|
Surface presentation of antigens protein |
488 |
PF07458
|
Sperm protein associated with nucleus, mapped to X chromosome |
489 |
PF10591
|
Secreted protein acidic and rich in cysteine Ca binding region |
490 |
PF07780
|
Spb1 C-terminal domain |
491 |
PF04573
|
Signal peptidase subunit |
492 |
PF08286
|
Spc24 subunit of Ndc80 |
493 |
PF11544
|
Spindle pole body component Spc42p |
494 |
PF08317
|
Spc7 kinetochore protein |
495 |
PF04130
|
Spc97 / Spc98 family |
496 |
PF10136
|
Site-specific recombinase |
497 |
PF00435
|
Spectrin repeat |
498 |
PF01564
|
Spermine/spermidine synthase |
499 |
PF08250
|
Sperm-activating peptides |
500 |
PF05324
|
Sperm antigen HE2 |
501 |
PF12138
|
Spherulation-specific family 4 |
502 |
PF09408
|
Spike receptor binding domain |
503 |
PF02513
|
Spin/Ssty Family |
504 |
PF05215
|
Spiralin |
505 |
PF08769
|
Sporulation initiation factor Spo0A C terminal |
506 |
PF07070
|
SpoOM protein |
507 |
PF03533
|
SPO11 homologue |
508 |
PF05032
|
Spo12 family |
509 |
PF03907
|
Spo7-like protein |
510 |
PF01052
|
Surface presentation of antigens (SPOA) |
511 |
PF07744
|
SPOC domain |
512 |
PF08486
|
Stage II sporulation protein |
513 |
PF07228
|
Stage II sporulation protein E (SpoIIE) |
514 |
PF06686
|
Stage III sporulation protein AC/AD protein family |
515 |
PF12685
|
SpoIIIAH-like protein |
516 |
PF12116
|
Stage III sporulation protein D |
517 |
PF07454
|
Stage II sporulation protein P (SpoIIP) |
518 |
PF06468
|
Spondin_N |
519 |
PF09388
|
Spo0E like sporulation regulatory protein |
520 |
PF05036
|
Sporulation related domain |
521 |
PF10612
|
Spore coat protein Z |
522 |
PF14153
|
Spore coat protein CotO |
523 |
PF05504
|
Spore germination B3/ GerAC like, C-terminal |
524 |
PF09671
|
Spore coat protein (Spore_GerQ) |
525 |
PF09548
|
Stage III sporulation protein AB (spore_III_AB) |
526 |
PF09546
|
Stage III sporulation protein AE (spore_III_AE) |
527 |
PF09581
|
Stage III sporulation protein AF (Spore_III_AF) |
528 |
PF09551
|
Stage II sporulation protein R (spore_II_R) |
529 |
PF09547
|
Stage IV sporulation protein A (spore_IV_A) |
530 |
PF03845
|
Spore germination protein |
531 |
PF09575
|
Small spore protein J (Spore_SspJ) |
532 |
PF09578
|
Spore cortex protein YabQ (Spore_YabQ) |
533 |
PF14147
|
Sporulation protein YhaL |
534 |
PF09580
|
Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) |
535 |
PF09577
|
Sporulation protein YpjB (SpoYpjB) |
536 |
PF09579
|
Sporulation protein YtfJ (Spore_YtfJ) |
537 |
PF14034
|
Sporulation protein YtrH |
538 |
PF09560
|
Sporulation protein YunB (Spo_YunB) |
539 |
PF05642
|
Sporozoite P67 surface antigen |
540 |
PF12164
|
Stage V sporulation protein AA |
541 |
PF00588
|
SpoU rRNA Methylase family |
542 |
PF12105
|
SpoU, rRNA methylase, C-terminal |
543 |
PF08183
|
Stage V sporulation protein family |
544 |
PF03862
|
SpoVA protein |
545 |
PF13782
|
Stage V sporulation protein AB |
546 |
PF07451
|
Stage V sporulation protein AD (SpoVAD) |
547 |
PF14097
|
Stage V sporulation protein AE1 |
548 |
PF04026
|
SpoVG |
549 |
PF14069
|
Stage VI sporulation protein F |
550 |
PF04293
|
SpoVR like protein |
551 |
PF04232
|
Stage V sporulation protein S (SpoVS) |
552 |
PF07448
|
Secreted phosphoprotein 24 (Spp-24) |
553 |
PF12118
|
SprA-related family |
554 |
PF05210
|
Sprouty protein (Spry) |
555 |
PF10263
|
SprT-like family |
556 |
PF00622
|
SPRY domain |
557 |
PF08243
|
SPT2 chromatin protein |
558 |
PF12090
|
Spt20 family |
559 |
PF06093
|
Spt4/RpoE2 zinc finger |
560 |
PF11942
|
Spt5 transcription elongation factor, acidic N-terminal |
561 |
PF03539
|
Spumavirus aspartic protease (A9) |
562 |
PF03534
|
Salmonella virulence plasmid 65kDa B protein |
563 |
PF05563
|
Salmonella plasmid virulence protein SpvD |
564 |
PF03779
|
SPW repeat |
565 |
PF03105
|
SPX domain |
566 |
PF08999
|
Surfactant protein C, N terminal propeptide |
567 |
PF00494
|
Squalene/phytoene synthase |
568 |
PF00299
|
Squash family serine protease inhibitor |
569 |
PF07304
|
Steroid receptor RNA activator (SRA1) |
570 |
PF08832
|
Steroid receptor coactivator |
571 |
PF00530
|
Scavenger receptor cysteine-rich domain |
572 |
PF00319
|
SRF-type transcription factor (DNA-binding and dimerisation domain) |
573 |
PF02118
|
Srg family chemoreceptor |
574 |
PF08236
|
SRI (Set2 Rpb1 interacting) domain |
575 |
PF04086
|
Signal recognition particle, alpha subunit, N-terminal |
576 |
PF02290
|
Signal recognition particle 14kD protein |
577 |
PF01922
|
SRP19 protein |
578 |
PF00660
|
Seripauperin and TIP1 family |
579 |
PF05022
|
SRP40, C-terminal domain |
580 |
PF00448
|
SRP54-type protein, GTPase domain |
581 |
PF02881
|
SRP54-type protein, helical bundle domain |
582 |
PF08492
|
SRP72 RNA-binding domain |
583 |
PF05486
|
Signal recognition particle 9 kDa protein (SRP9) |
584 |
PF09439
|
Signal recognition particle receptor beta subunit |
585 |
PF02978
|
Signal peptide binding domain |
586 |
PF07709
|
Seven Residue Repeat |
587 |
PF07985
|
SRR1 |
588 |
PF09201
|
SRX |
589 |
PF00436
|
Single-strand binding protein family |
590 |
PF10141
|
Single-strand DNA-specific exonuclease, C terminal domain |
591 |
PF04503
|
Single-stranded DNA binding protein, SSDP |
592 |
PF07179
|
SseB protein |
593 |
PF04888
|
Secretion system effector C (SseC) like family |
594 |
PF00474
|
Sodium:solute symporter family |
595 |
PF04686
|
Streptomyces sporulation and cell division protein, SsgA |
596 |
PF00720
|
Subtilisin inhibitor-like |
597 |
PF04056
|
Ssl1-like |
598 |
PF06933
|
Special lobe-specific silk protein SSP160 |
599 |
PF04386
|
Stringent starvation protein B |
600 |
PF08141
|
Small acid-soluble spore protein H family |
601 |
PF14098
|
Small, acid-soluble spore protein I |
602 |
PF08176
|
Small acid-soluble spore protein K family |
603 |
PF08177
|
Small acid-soluble spore protein N family |
604 |
PF08175
|
Small acid-soluble spore protein O family |
605 |
PF08179
|
Small acid-soluble spore protein P family |
606 |
PF03531
|
Structure-specific recognition protein (SSRP1) |
607 |
PF04722
|
Ssu72-like protein |
608 |
PF09514
|
SSXRD motif |
609 |
PF05030
|
SSXT protein (N-terminal region) |
610 |
PF04184
|
ST7 protein |
611 |
PF08514
|
STAG domain |
612 |
PF03298
|
Stanniocalcin family |
613 |
PF09022
|
Staphostatin A |
614 |
PF09023
|
Staphostatin B |
615 |
PF04022
|
Staphylocoagulase repeat |
616 |
PF02821
|
Staphylokinase/Streptokinase family |
617 |
PF05480
|
Staphylococcus haemolytic protein |
618 |
PF01123
|
Staphylococcal/Streptococcal toxin, OB-fold domain |
619 |
PF02876
|
Staphylococcal/Streptococcal toxin, beta-grasp domain |
620 |
PF01852
|
START domain |
621 |
PF01740
|
STAS domain |
622 |
PF13466
|
STAS domain |
623 |
PF12162
|
STAT1 TAZ2 binding domain |
624 |
PF12188
|
Signal transducer and activator of transcription 2 C terminal |
625 |
PF03875
|
Statherin |
626 |
PF00836
|
Stathmin family |
627 |
PF01017
|
STAT protein, all-alpha domain |
628 |
PF02864
|
STAT protein, DNA binding domain |
629 |
PF02865
|
STAT protein, protein interaction domain |
630 |
PF12638
|
Staygreen protein |
631 |
PF06406
|
StbA protein |
632 |
PF12898
|
Stc1 domain |
633 |
PF02200
|
STE like transcription factor |
634 |
PF11610
|
Scaffold protein Ste5-Fus5 binding region |
635 |
PF09235
|
Ste50p, sterile alpha motif |
636 |
PF12349
|
Sterol-sensing domain of SREBP cleavage-activation |
637 |
PF08498
|
Sterol methyltransferase C-terminal |
638 |
PF04885
|
Stigma-specific protein, Stig1 |
639 |
PF13756
|
Stimulus-sensing domain |
640 |
PF09061
|
Stirrup |
641 |
PF10494
|
Serine-threonine protein kinase 19 |
642 |
PF09598
|
Stm1 |
643 |
PF07660
|
Secretin and TonB N terminus short domain |
644 |
PF12016
|
Stonin 2 |
645 |
PF05217
|
STOP protein |
646 |
PF06638
|
Strabismus protein |
647 |
PF06100
|
Streptococcal 67 kDa myosin-cross-reactive antigen like family |
648 |
PF04270
|
Streptococcal histidine triad protein |
649 |
PF06696
|
Streptococcal surface antigen repeat |
650 |
PF01657
|
Salt stress response/antifungal |
651 |
PF08232
|
Striatin family |
652 |
PF03088
|
Strictosidine synthase |
653 |
PF13607
|
Succinyl-CoA ligase like flavodoxin domain |
654 |
PF00862
|
Sucrose synthase |
655 |
PF06999
|
Sucrase/ferredoxin-like |
656 |
PF05843
|
Suppressor of forked protein (Suf) |
657 |
PF05076
|
Suppressor of fused protein (SUFU) |
658 |
PF12470
|
Suppressor of Fused Gli/Ci N terminal binding domain |
659 |
PF00083
|
Sugar (and other) transporter |
660 |
PF06800
|
Sugar transport protein |
661 |
PF14433
|
SUKH-3 immunity protein |
662 |
PF14435
|
SUKH-4 immunity protein |
663 |
PF08257
|
Sulfakinin family |
664 |
PF00884
|
Sulfatase |
665 |
PF00916
|
Sulfate transporter family |
666 |
PF13792
|
Sulfate transporter N-terminal domain with GLY motif |
667 |
PF05584
|
Sulfolobus plasmid regulatory protein |
668 |
PF00685
|
Sulfotransferase domain |
669 |
PF03567
|
Sulfotransferase family |
670 |
PF13469
|
Sulfotransferase family |
671 |
PF12193
|
Sulfolobus virus coat protein C terminal |
672 |
PF04143
|
Sulphur transport |
673 |
PF09037
|
Stf0 sulphotransferase |
674 |
PF06687
|
SUR7/PalI family |
675 |
PF09312
|
SurA N-terminal domain |
676 |
PF13623
|
SurA N-terminal domain |
677 |
PF13624
|
SurA N-terminal domain |
678 |
PF01975
|
Survival protein SurE |
679 |
PF02104
|
SURF1 family |
680 |
PF05477
|
Surfeit locus protein 2 (SURF2) |
681 |
PF02077
|
SURF4 family |
682 |
PF04935
|
Surfeit locus protein 6 |
683 |
PF01617
|
Surface antigen |
684 |
PF11054
|
Sporozoite TA4 surface antigen |
685 |
PF07244
|
Surface antigen variable number repeat |
686 |
PF07712
|
Stress up-regulated Nod 19 |
687 |
PF01805
|
Surp module |
688 |
PF07980
|
SusD family |
689 |
PF12741
|
Susd and RagB outer membrane lipoprotein |
690 |
PF12771
|
Starch-binding associating with outer membrane |
691 |
PF14322
|
Starch-binding associating with outer membrane |
692 |
PF14292
|
SusE outer membrane protein |
693 |
PF00084
|
Sushi domain (SCR repeat) |
694 |
PF12752
|
SUZ domain |
695 |
PF12901
|
SUZ-C motif |
696 |
PF05326
|
Seminal vesicle autoantigen (SVA) |
697 |
PF08622
|
Svf1-like |
698 |
PF12113
|
SVM protein signal sequence |
699 |
PF10578
|
Seminal vesicle protein repeat |
700 |
PF07061
|
Swi5 |
701 |
PF02201
|
SWIB/MDM2 domain |
702 |
PF04434
|
SWIM zinc finger |
703 |
PF04433
|
SWIRM domain |
704 |
PF04099
|
Sybindin-like family |
705 |
PF07348
|
Syd protein (SUKH-2) |
706 |
PF08231
|
SYF2 splicing factor |
707 |
PF02383
|
SacI homology domain |
708 |
PF12295
|
Symplekin tight junction protein C terminal |
709 |
PF05835
|
Synaphin protein |
710 |
PF02078
|
Synapsin, N-terminal domain |
711 |
PF02750
|
Synapsin, ATP binding domain |
712 |
PF10581
|
Synapsin N-terminal |
713 |
PF00957
|
Synaptobrevin |
714 |
PF01034
|
Syndecan domain |
715 |
PF00804
|
Syntaxin |
716 |
PF10496
|
SNARE-complex protein Syntaxin-18 N-terminus |
717 |
PF09177
|
Syntaxin 6, N-terminal |
718 |
PF01387
|
Synuclein |
719 |
PF01023
|
S-100/ICaBP type calcium binding domain |
720 |
PF05124
|
S-layer like family, C-terminal region |
721 |
PF05123
|
S-layer like family, N-terminal region |
722 |
PF00954
|
S-locus glycoprotein family |
723 |
PF00902
|
Sec-independent protein translocase protein (TatC) |
724 |
PF01925
|
Sulfite exporter TauE/SafE |
725 |
PF03898
|
Satellite tobacco necrosis virus coat protein |
726 |
PF00087
|
Snake toxin |
727 |
PF07473
|
Spasmodic peptide gm9a |
728 |
PF07906
|
ShET2 enterotoxin, N-terminal region |
729 |
PF00451
|
Scorpion short toxin, BmKK2 |
730 |
PF08091
|
Spider insecticidal peptide |
731 |
PF08099
|
Scorpion calcine family |
732 |
PF08115
|
SFI toxin family |
733 |
PF00537
|
Scorpion toxin-like domain |
734 |
PF08119
|
Scorpion acidic alpha-KTx toxin family |
735 |
PF08396
|
Spider toxin omega agatoxin/Tx1 family |
736 |
PF05294
|
Scorpion short toxin |
737 |
PF02819
|
Spider toxin |
738 |
PF12477
|
Sex factor F TraW protein N terminal |
739 |
PF01978
|
Sugar-specific transcriptional regulator TrmB |
740 |
PF07240
|
Stress-inducible humoral factor Turandot |
741 |
PF12352
|
Snare region anchored in the vesicle membrane C-terminus |
742 |
PF12189
|
Single-strand DNA-binding protein |
743 |
PF03538
|
Salmonella virulence plasmid 28.1kDa A protein |
744 |
PF03536
|
Salmonella virulence-associated 28kDa protein |
745 |
PF10298
|
Sporulation Regulator WhiA N terminal |
746 |
PF09109
|
Switch protein XOL-1, GHMP-like |
747 |
PF09108
|
Switch protein XOL-1, N-terminal |
748 |
PF12127
|
SigmaW regulon antibacterial |
749 |
PF01514
|
Secretory protein of YscJ/FliF family |
750 |
PF13866
|
SAP30 zinc-finger |
751 |
PF04810
|
Sec23/Sec24 zinc finger |