3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07738

Details:

PFam ID : PF07738

PFam Domain Description : Sad1 / UNC-like C-terminal

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 377

Average sequence length: 121.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07738	B0K9K7_THEP3_1_54	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07738	D8RHG6_SELML_242_281	96.8

Sequence based PCA Plot of the family - PF07738 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=60 Length=8
Motif2 Start=37 Length=8
Motif3 Start=10 Length=8
Motif4 Start=158 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay