3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03539

Details:

PFam ID : PF03539

PFam Domain Description : Spumavirus aspartic protease (A9)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 13

Average sequence length: 146.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03539	Q4E999_9RICK_84_200	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03539	Q9J4C7_9RETR_11_173	100

Sequence based PCA Plot of the family - PF03539 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay