3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08501

Details:

PFam ID : PF08501

PFam Domain Description : Shikimate dehydrogenase substrate binding domain

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 1784

Average sequence length: 81.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08501	D3U5B5_9TOMB_29_206	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08501	Q26CZ0_FLABB_13_108	100

Sequence based PCA Plot of the family - PF08501 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=23
Motif2 Start=72 Length=11
Motif3 Start=51 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay