3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12680

Details:

PFam ID : PF12680

PFam Domain Description : SnoaL-like domain

Number of Sequence in 50% Dataset : 1153

Number of Sequence in Full Dataset : 2858

Average sequence length: 105.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12680	A3WDI4_9SPHN_8_110	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12680	E4M718_9FIRM_1_60	98.2

Sequence based PCA Plot of the family - PF12680 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=93 Length=8
Motif3 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay