3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12103

Details:

PFam ID : PF12103

PFam Domain Description : Surface lipoprotein of Spirochaetales order

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 9

Average sequence length: 149.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12103	D9MNI7_LEPIN_30_107	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12103	Q6S9R8_9LEPT_45_242	100

Sequence based PCA Plot of the family - PF12103 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay