3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01252

Details:

PFam ID : PF01252

PFam Domain Description : Signal peptidase (SPase) II

Number of Sequence in 50% Dataset : 248

Number of Sequence in Full Dataset : 1446

Average sequence length: 151.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01252	C0EWH5_9FIRM_1_198	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01252	B2UM85_AKKM8_22_255	100

Sequence based PCA Plot of the family - PF01252 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=186 Length=8
Motif2 Start=153 Length=14
Motif3 Start=103 Length=8
Motif4 Start=203 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay