3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00209

Details:

PFam ID : PF00209

PFam Domain Description : Sodium:neurotransmitter symporter family

Number of Sequence in 50% Dataset : 438

Number of Sequence in Full Dataset : 3336

Average sequence length: 260.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00209	E9J4B1_SOLIN_13_160	79.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00209	E7EML8_HUMAN_359_397	100

Sequence based PCA Plot of the family - PF00209 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay