3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12113

Details:

PFam ID : PF12113

PFam Domain Description : SVM protein signal sequence

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 53

Average sequence length: 32.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12113	E8YH33_9BURK_12_52	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12113	B1VAL0_PHYAS_3_32	100

Sequence based PCA Plot of the family - PF12113 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay