3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13721

Details:

PFam ID : PF13721

PFam Domain Description : SecD export protein N-terminal TM region

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 333

Average sequence length: 100.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13721	E0XSS7_9PROT_1_112	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13721	E0XSS7_9PROT_1_112	100

Sequence based PCA Plot of the family - PF13721 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=18 Length=8
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay