3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00856

Details:

PFam ID : PF00856

PFam Domain Description : SET domain

Number of Sequence in 50% Dataset : 1265

Number of Sequence in Full Dataset : 3512

Average sequence length: 142.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00856	A5K6G9_PLAVS_397_610	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00856	C5M3I4_CANTT_84_302	98.6

Sequence based PCA Plot of the family - PF00856 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=390 Length=17
Motif4 Start=370 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay