3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14438

Details:

PFam ID : PF14438

PFam Domain Description : SM domain found in Ataxin-2

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 141

Average sequence length: 118.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14438	B5YMG3_THAPS_153_278	82.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14438	C5DCK7_LACTC_45_194	100

Sequence based PCA Plot of the family - PF14438 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8
Motif4 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay