3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13530

Details:

PFam ID : PF13530

PFam Domain Description : Sterol carrier protein domain

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 380

Average sequence length: 206.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13530	E6LLL8_9FIRM_181_323	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13530	B2GGW2_KOCRD_216_463	100

Sequence based PCA Plot of the family - PF13530 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=77 Length=8
Motif3 Start=148 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay