3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02060

Details:

PFam ID : PF02060

PFam Domain Description : Slow voltage-gated potassium channel

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 49

Average sequence length: 90.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02060	KCNE3_RAT_40_105	61.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02060	E1BUP2_CHICK_2_126	100

Sequence based PCA Plot of the family - PF02060 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay