3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05184

Details:

PFam ID : PF05184

PFam Domain Description : Saposin-like type B, region 1

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 502

Average sequence length: 38.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05184	B4LKL3_DROVI_498_536	98.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05184	Q0IH47_XENLA_60_98	97.0

Sequence based PCA Plot of the family - PF05184 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay