3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10327

Details:

PFam ID : PF10327

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Sri

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 214

Average sequence length: 241

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10327	E3LIV0_CAERE_1_101	72.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10327	B6IGG5_CAEBR_12_313	100

Sequence based PCA Plot of the family - PF10327 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=8
Motif2 Start=65 Length=8
Motif3 Start=114 Length=8
Motif4 Start=302 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay