3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05889

Details:

PFam ID : PF05889

PFam Domain Description : Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 121

Average sequence length: 319.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05889	D9PXT6_METTM_90_374	28

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05889	C4QI90_SCHMA_61_497	100

Sequence based PCA Plot of the family - PF05889 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=258 Length=8
Motif2 Start=274 Length=11
Motif3 Start=234 Length=11
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay