3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02482

Details:

PFam ID : PF02482

PFam Domain Description : Sigma 54 modulation protein / S30EA ribosomal protein

Number of Sequence in 50% Dataset : 187

Number of Sequence in Full Dataset : 1220

Average sequence length: 96.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02482	Q1ZJ44_9GAMM_63_166	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02482	Q4JC48_SULAC_254_368	100

Sequence based PCA Plot of the family - PF02482 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=59 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay