3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05739

Details:

PFam ID : PF05739

PFam Domain Description : SNARE domain

Number of Sequence in 50% Dataset : 167

Number of Sequence in Full Dataset : 1294

Average sequence length: 61.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05739	D8LWC5_BLAHO_3_72	33.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05739	D8LWC5_BLAHO_3_72	93.2

Sequence based PCA Plot of the family - PF05739 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=48 Length=8
Motif2 Start=30 Length=17
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay