3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00670

Details:

PFam ID : PF00670

PFam Domain Description : S-adenosyl-L-homocysteine hydrolase, NAD binding domain

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 692

Average sequence length: 158.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00670	A8SP22_9FIRM_142_276	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00670	D1BET0_SANKS_167_329	99.7

Sequence based PCA Plot of the family - PF00670 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=30 Length=17
Motif2 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay