3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01145

Details:

PFam ID : PF01145

PFam Domain Description : SPFH domain / Band 7 family

Number of Sequence in 50% Dataset : 479

Number of Sequence in Full Dataset : 3606

Average sequence length: 189.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01145	B2URB5_AKKM8_49_249	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01145	C5N2B8_STAA3_1_66	99.5

Sequence based PCA Plot of the family - PF01145 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=108 Length=8
Motif2 Start=53 Length=20
Motif3 Start=146 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay