3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04136

Details:

PFam ID : PF04136

PFam Domain Description : Sec34-like family

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 133

Average sequence length: 147.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04136	Q5B3J4_EMENI_126_190	28.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04136	C5E2S0_LACTC_58_221	100

Sequence based PCA Plot of the family - PF04136 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=123 Length=8
Motif3 Start=104 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay