3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13593

Details:

PFam ID : PF13593

PFam Domain Description : SBF-like CPA transporter family (DUF4137)

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 414

Average sequence length: 290.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13593	Q8PZ72_METMA_101_162	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13593	F2F6J6_9BACL_11_307	100

Sequence based PCA Plot of the family - PF13593 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=111 Length=8
Motif3 Start=37 Length=8
Motif4 Start=320 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay