3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09599

Details:

PFam ID : PF09599

PFam Domain Description : Salmonella-Shigella invasin protein C (IpaC_SipC)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 19

Average sequence length: 283.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09599	BIPC_BURTA_34_397	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09599	C4UMD1_YERRU_134_494	100

Sequence based PCA Plot of the family - PF09599 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay