3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08295

Details:

PFam ID : PF08295

PFam Domain Description : Sin3 family co-repressor

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 142

Average sequence length: 97.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08295	B6JVM6_SCHJY_462_561	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08295	B6JVM6_SCHJY_462_561	100

Sequence based PCA Plot of the family - PF08295 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=64 Length=8
Motif3 Start=6 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay