3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00902

Details:

PFam ID : PF00902

PFam Domain Description : Sec-independent protein translocase protein (TatC)

Number of Sequence in 50% Dataset : 214

Number of Sequence in Full Dataset : 1104

Average sequence length: 215.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00902	Q2JUY9_SYNJA_36_118	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00902	F2AZ27_RHOBA_20_351	100

Sequence based PCA Plot of the family - PF00902 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=240 Length=8
Motif2 Start=76 Length=14
Motif3 Start=283 Length=8
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay