3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04832

Details:

PFam ID : PF04832

PFam Domain Description : SOUL heme-binding protein

Number of Sequence in 50% Dataset : 164

Number of Sequence in Full Dataset : 358

Average sequence length: 164.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04832	B9SV14_RICCO_1_61	90.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04832	D8TMZ5_VOLCA_9_224	100

Sequence based PCA Plot of the family - PF04832 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=49 Length=8
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay