3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01103

Details:

PFam ID : PF01103

PFam Domain Description : Surface antigen

Number of Sequence in 50% Dataset : 768

Number of Sequence in Full Dataset : 2221

Average sequence length: 320.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01103	B4FZ28_MAIZE_183_381	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01103	B8GLZ4_THISH_371_512	98.7

Sequence based PCA Plot of the family - PF01103 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=111 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=8
Motif4 Start=191 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay