3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11610

Details:

PFam ID : PF11610

PFam Domain Description : Scaffold protein Ste5-Fus5 binding region

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 15

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11610	E0VN41_PEDHC_236_297	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11610	E7LSM7_YEASV_148_177	100

Sequence based PCA Plot of the family - PF11610 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay