3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11007

Details:

PFam ID : PF11007

PFam Domain Description : Spore coat associated protein JA (CotJA)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 117

Average sequence length: 36.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11007	C6N333_9GAMM_20_111	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11007	D4W6U1_9FIRM_1_34	100

Sequence based PCA Plot of the family - PF11007 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=6 Length=8
Motif2 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay