3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12510

Details:

PFam ID : PF12510

PFam Domain Description : Smoothelin cytoskeleton protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 50

Average sequence length: 49.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12510	E4WRC3_OIKDI_2_46	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12510	B7QHI5_IXOSC_10_53	100

Sequence based PCA Plot of the family - PF12510 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay