3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03842

Details:

PFam ID : PF03842

PFam Domain Description : Silicon transporter

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 65

Average sequence length: 274.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03842	A9BET0_PETMO_6_78	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03842	A5J0F2_9STRA_1_139	98.4

Sequence based PCA Plot of the family - PF03842 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay