3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12282

Details:

PFam ID : PF12282

PFam Domain Description : Signal transduction histidine kinase

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 134

Average sequence length: 144.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12282	B8E277_DICTD_2_141	18.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12282	E3BAR0_9MICO_4_198	100

Sequence based PCA Plot of the family - PF12282 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=11
Motif2 Start=58 Length=8
Motif3 Start=109 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay