3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02675

Details:

PFam ID : PF02675

PFam Domain Description : S-adenosylmethionine decarboxylase

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 475

Average sequence length: 110.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02675	A1WEC8_VEREI_2_118	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02675	D6TKE6_9CHLR_4_115	100

Sequence based PCA Plot of the family - PF02675 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=18
Motif2 Start=22 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay