3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00575

Details:

PFam ID : PF00575

PFam Domain Description : S1 RNA binding domain

Number of Sequence in 50% Dataset : 546

Number of Sequence in Full Dataset : 8861

Average sequence length: 74.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00575	Q5GSE0_WOLTR_41_171	79.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00575	Q4Z1D8_PLABA_90_160	99.6

Sequence based PCA Plot of the family - PF00575 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=4 Length=8
Motif2 Start=48 Length=8
Motif3 Start=16 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay