3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00018

Details:

PFam ID : PF00018

PFam Domain Description : SH3 domain

Number of Sequence in 50% Dataset : 158

Number of Sequence in Full Dataset : 3467

Average sequence length: 47.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00018	E9GZ27_DAPPU_1_47	85.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00018	E3L5Y8_PUCGT_31_95	100

Sequence based PCA Plot of the family - PF00018 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay