3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10263

Details:

PFam ID : PF10263

PFam Domain Description : SprT-like family

Number of Sequence in 50% Dataset : 165

Number of Sequence in Full Dataset : 741

Average sequence length: 157.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10263	E3KPD6_PUCGT_93_350	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10263	C3ITJ5_BACTU_5_130	99.4

Sequence based PCA Plot of the family - PF10263 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=126 Length=8
Motif2 Start=8 Length=18
Motif3 Start=153 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay