3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00584

Details:

PFam ID : PF00584

PFam Domain Description : SecE/Sec61-gamma subunits of protein translocation complex

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 1220

Average sequence length: 56.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00584	B3E157_METI4_33_98	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00584	B3E157_METI4_33_98	91.7

Sequence based PCA Plot of the family - PF00584 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=1 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay