3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10136

Details:

PFam ID : PF10136

PFam Domain Description : Site-specific recombinase

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 99

Average sequence length: 603.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10136	D4DUK4_NEIEG_1_101	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10136	F1VVE2_9BURK_10_669	100

Sequence based PCA Plot of the family - PF10136 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=84 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay