3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02403

Details:

PFam ID : PF02403

PFam Domain Description : Seryl-tRNA synthetase N-terminal domain

Number of Sequence in 50% Dataset : 250

Number of Sequence in Full Dataset : 1548

Average sequence length: 108.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02403	A6G427_9DELT_3_130	78.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02403	A6G427_9DELT_3_130	100

Sequence based PCA Plot of the family - PF02403 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=25 Length=8
Motif3 Start=38 Length=8
Motif4 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay