3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06696

Details:

PFam ID : PF06696

PFam Domain Description : Streptococcal surface antigen repeat

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 71

Average sequence length: 24.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06696	B5IET9_ACIB4_52_180	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06696	A6H0E4_FLAPJ_498_522	100

Sequence based PCA Plot of the family - PF06696 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay