3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03083

Details:

PFam ID : PF03083

PFam Domain Description : Sugar efflux transporter for intercellular exchange

Number of Sequence in 50% Dataset : 160

Number of Sequence in Full Dataset : 852

Average sequence length: 83.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03083	Q9BMV5_DROMA_1_232	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03083	E3DGA9_ERWSE_1_50	100

Sequence based PCA Plot of the family - PF03083 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay