3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04885

Details:

PFam ID : PF04885

PFam Domain Description : Stigma-specific protein, Stig1

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 127

Average sequence length: 90.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04885	A5C8A5_VITVI_363_445	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04885	C6T6H8_SOYBN_8_158	100

Sequence based PCA Plot of the family - PF04885 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=103 Length=8
Motif4 Start=118 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay