3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00565

Details:

PFam ID : PF00565

PFam Domain Description : Staphylococcal nuclease homologue

Number of Sequence in 50% Dataset : 473

Number of Sequence in Full Dataset : 1652

Average sequence length: 105.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00565	A8ZKQ6_ACAM1_9_70	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00565	E1ZIB1_9CHLO_911_1080	100

Sequence based PCA Plot of the family - PF00565 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=8
Motif2 Start=63 Length=8
Motif3 Start=164 Length=11
Motif4 Start=101 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay