3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08236

Details:

PFam ID : PF08236

PFam Domain Description : SRI (Set2 Rpb1 interacting) domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 85

Average sequence length: 88.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08236	C1H221_PARBA_685_758	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08236	SET2_SCHPO_690_781	100

Sequence based PCA Plot of the family - PF08236 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay