3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08557

Details:

PFam ID : PF08557

PFam Domain Description : Sphingolipid Delta4-desaturase (DES)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 134

Average sequence length: 36.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08557	C5MJB0_CANTT_1_19	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08557	C5MJB0_CANTT_1_19	100

Sequence based PCA Plot of the family - PF08557 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay