3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08317

Details:

PFam ID : PF08317

PFam Domain Description : Spc7 kinetochore protein

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 70

Average sequence length: 308.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08317	A9V0C0_MONBE_1007_1220	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08317	A5DJQ1_PICGU_356_688	98.5

Sequence based PCA Plot of the family - PF08317 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=78 Length=8
Motif3 Start=69 Length=8
Motif4 Start=137 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay