3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08021

Details:

PFam ID : PF08021

PFam Domain Description : Siderophore-interacting FAD-binding domain

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 615

Average sequence length: 110.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08021	C3JFC0_RHOER_1_164	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08021	E1VYZ3_ARTAR_322_470	100

Sequence based PCA Plot of the family - PF08021 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=17
Motif2 Start=85 Length=8
Motif3 Start=130 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay