3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01617

Details:

PFam ID : PF01617

PFam Domain Description : Surface antigen

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 932

Average sequence length: 170.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01617	B3CMZ8_WOLPP_72_186	74.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01617	O85360_EHRCA_32_133	100

Sequence based PCA Plot of the family - PF01617 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=105 Length=8
Motif3 Start=121 Length=8
Motif4 Start=12 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay