3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09514

Details:

PFam ID : PF09514

PFam Domain Description : SSXRD motif

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 16

Average sequence length: 30

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09514	E8JNI6_STREI_29_99	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09514	B1AUS7_MOUSE_93_123	100

Sequence based PCA Plot of the family - PF09514 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay